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Species belonging to selected taxon:

Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus



ABOUT THIS RECORD

ID: MNEST002364
species: Raphanus raphanistrum subsp. landra
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Raphanus raphanistrum subsp. landra Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCACA

miRNA*
TGCTCACTGCTCTCTCTGTCAGA

mismatches: 1
bulges: 2

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pre-miRNA
ACAAAAGAAAAACATAGCAACTGACAGAAGAGAGTGAGCACACAAAGGTAATTTGCATATACTGCATTTGCTTCTCTTGCGTGCTCACTGCTCTCTCTGT
CAGA
TTCTAATGCTGATCTCTT


dot-bracket secondary structure
..............(((((.(((((((((((((((((((((.(((((((((..((((.....)))).))))))...))).))))))))).)))).)))))
))).
......))))).......



SIMILARITIES
miRBase aly-MIR156a: 9e-36

PMRD bna-miR156a: 5e-34

microPC miR156: 2e-33
UniProt no hits

RFAM mir-156: 9e-27
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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